Hi,
I recently purchased a stomp. The first thing I did was choose the most heavily distorted channel preset on the Stomp and one-by-one connect each of my external pedals before and after the stomp to hear the difference. Going through this process each pedal showed a noticeable difference in how it interacted with the Stomp. So, given that, I arranged my pedals to give myself the most control with each one from clean to high gain.
I will say that the sounds, although usable, are noticeably diminished even in their best placement. For most of them I can ignore this slight decrease in performance, but for the Flint, it really bothers me. If I put it after the Stomp, it washes everything out and if I put it before, the sound is much more clear, but not nearly as crisp as it is on its own.
Right now I am going:
Sonic Research Tuner -> Warden (compression) -> Distortion/Overdrive -> Flint -> Stomp -> Synth9 -> Enzo -> Ottobit -> Grand Orbiter -> Avalanche Run -> Ditto Stereo looper -> J48 Radial DI -> Interface