ToneWitch

Hello, I have my HXS set up for 4CM into a Roland JC40. The question I have is this. I use a modded GE7 in my effects loop. My dirt pedals before the HXS. Issue being is some songs I bypass the HXS and only use my dirt pedals. When bypassing the HXS will I lose the ability to use the GE7 as a clean volume boost in the loop? appreciate any help. thanks.