OK, I see some confusion about my last post. Most of my presets (ones I use every day) are hitting the -3db. The test tone as we will call it, never exceeded -20db or so. To answer your questions:
I did not mute either channel, I have input 1 set to guitar and input 2 to variax making that a moog point.
Did not use same for input 2, I always set input 2 to variax.
I used the USB output for the test. The software I used is open source, so I don’t think there is any calibration. If I where submitting this somewhere as an official test I would be more concerned.
I have taken some screen shots of the test you mentioned. I also took some screen shots of a preset I use from time to time. It is called PK75 EFFECT 3. I tested that preset also, with screen shots of the test. This is one of the presets I said is hitting the -3db range.
So, looking at the two different tests, you can see that my Les Paul does not have too high of an input. Because your test tone shows that. Also, that there is clipping in my preset PK75 EFFECT 3. Because my test shows that. And that this clipping causes adverse effect on the tone quality. Regardless of the master output level.
So, as I asked the question in my first post. Using a DAW or other metering software, like the graphical analyzer. It will show internal clipping that affects the tone quality. And when using that preset live, will have a poor tone quality.