Chris, I've experienced the same thing as you. When I first read this, I thought "I wonder if he's using the AC15 model." Sure enough, that's what you said. I have found it's an issue with that model specifically. And that's a bummer, because I like the low-mid character of that model, and would love to use it if it weren't for the static-y breakup at higher gain settings.
I researched it a little further and compared with/without cab model. No difference, but using the stock cab model masks it a little bit by taking away some high presence.
Then I plugged midi into the head and plugged straight in, and used the firmware update & third-party software to load the AC15 model onto channel B. The digital clipping was still there, but wasn't quite as obvious.
But in the end, it was there in all situations. I think it's just the way they modeled the AC15.