No. They wont sound identical neither they do between Native and the original Helix, because your audio interface input doesnt work same way as the Helix input hardware (which always been one of its core ane best features compared to the average audio interface).
They can sound very similar, as soon as you find the best balance between audio interface input gain, and software/DAW/plugin gain, but out of e box they really dont. Not in my experience anyway.