You don't need a battery, when you use the Helix Ethernet port. It's then powerd by the Helix.
Do you use different presets for the Variax and regular guitar? Then maybe the output settings (if you use Multi or XLR, 1/4) could affect the headphone volume depending on the global headphones settings.
If you use the same preset, there should be no difference, when the external FRFR volume is fine.
" - PS when is 2.9 coming out? :-) "
This year, ...maybe :)